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    Transcriptome

    The transcriptome is the complete set of all RNA molecules in a cell, a population of cells or in an organism. Researchers can determine when and where each gene is turned on or off in the cells and tissues of an organism after analyzing the entire collection of RNA sequences in a cell.

    Webinars

    • SEP 08, 2020 | 10:00 AM
      Keynote Presentation: Single-cell virus sequencing of influenza infections that trigger innate immunity
      Keynote Presentation: Single-cell virus sequencing of influenza...
      Influenza infections are initiated by just a handful of virions infecting a handful of cells, so it is important to understand what happens in single infected cells. I will describe work tha...
      Speaker: Jesse D. Bloom, PhD
      Presented at: Microbiology Week Virtual Event Series 2020
      4
      SEP 02, 2020 | 7:00 AM
      Whole transcriptome in situ cell atlas reveals cellular composition and interactions in the developing human brain
      Whole transcriptome in situ cell atlas reveals cellular composition...
      DATE: September 2, 2020 TIME: 03:00pm PDT, 6:00pm EDT Spatial omics is an expanding collection of methods to examine biological molecules in their geographical context. By retaining the prec...
      Speaker: Dr. Omer Bayraktar , Pawel Zajac, Ph.D. , Dr. Rudy Van Eijsden
      Sponsored By: Illumina, NanoString Technologies
      19 3
      JUL 07, 2020 | 8:00 AM
      Development of an extraction-free, saliva-based workflow for SARS-CoV-2 detection with the Biomark™ HD platform
      Development of an extraction-free, saliva-based workflow for SARS-CoV-2...
      The need for high-throughput laboratory testing to identify SARS-CoV-2 infected individuals has reached nearly unprecedented levels. This demand has also led to supply chain issues that have...
      Speaker: David King, PhD , Richard Head, MS
      Presented at: Fluidigm Infectious Disease and Oncology Virtual Summit
      1
      JUN 17, 2020 | 1:30 PM
      Insights into the Pathogenesis of COVID-19 as Revealed by Spatial Biology
      Insights into the Pathogenesis of COVID-19 as Revealed by Spatial...
      Understanding the complex interplay between a pathogen and the host response is important to developing effective vaccines and therapeutics. The nCounter® Analysis System and GeoMx®...
      Speaker: Joseph M. Beechem, PhD , Christopher E. Mason, PhD , Robert Schwartz, PhD
      Presented at: Coronavirus Series
      Sponsored By: NanoString Technologies
      9
      JUN 03, 2020 | 12:00 PM
      Single cell multiomic analysis of T-cell exhaustion
      Single cell multiomic analysis of T-cell exhaustion
      A key step in the clinical production of CAR T cells is the expansion of engineered T cells. To generate enough cells for viable adoptive cell therapy, cells must be robustly stimulated, whi...
      Speaker: Pratip K. Chattopadhyay
      Presented at: Immuno-Oncology Virtual Event Series 2020
      Sponsored By: BD
      2
      JUN 02, 2020 | 4:30 PM
      Plenary Address
      Plenary Address
      ...
      Speaker: Plenary Keynote: Xiaowei Zhuang, PhD
      Presented at: 2020 6th annual BRAIN Initiative Investigators Virtual Meeting
      1
      JUN 02, 2020 | 1:30 PM
      Symposium 7 - Molecular Taxonomies of Brain Cells
      Symposium 7 - Molecular Taxonomies of Brain Cells
      Recent advances in high-throughput single-cell transcriptomics and epigenomics methods allow to measure the expression of thousands of genes and identify the gene transcriptional regulation...
      Speaker: Organizer(s): Yong Yao
      Presented at: 2020 6th annual BRAIN Initiative Investigators Virtual Meeting
      1
      MAY 28, 2020 | 10:00 AM
      In situ immune profiling of heart transplant biopsies improves diagnostic accuracy and rejection risk stratification
      In situ immune profiling of heart transplant biopsies improves...
      DATE: May 28, 2020 TIME: 10:00am PT, 1:00pm ET Cardiac allograft rejection is a serious concern in transplant medicine, conferring an increased risk of acute graft failure and adverse patient...
      Speaker: Eliot Peyster, MD, MSc
      Sponsored By: Akoya Biosciences
      11
      MAY 20, 2020 | 9:00 AM
      Keynote Presentation: Quantitative biology with droplet microfluidics
      Keynote Presentation: Quantitative biology with droplet microfluidics
      Many questions at the forefront of biology depend on the interactions of millions of single cells. My lab develops technologies for studying large numbers of single cells. In this talk, I wi...
      Speaker: Adam Abate, PhD
      Presented at: Laboratory Automation & Informatics Virtual Event Series 2020
      1
      MAY 20, 2020 | 12:00 AM
      Single-cell Genomics Tools for better understanding and treatment of Human Disease
      Single-cell Genomics Tools for better understanding and treatment...
      The basic units of biological structure and function are cells, which exhibit wide variation in regard to both type and state. We assess such variation by simultaneously profiling the transc...
      Speaker: Anindita Basu, PhD
      Presented at: Laboratory Automation & Informatics Virtual Event Series 2020
      2
      MAY 19, 2020 | 1:45 PM
      Cancer Transcriptome Atlas with NGS Readout - The essential tool for spatial genomics in oncology
      Cancer Transcriptome Atlas with NGS Readout - The essential tool...
      While many technologies focus on either exploring the spatial context of a handful of targets, or expression patterns of hundreds or thousands of targets in bulk samples or dissociated singl...
      Speaker: Kit Fuhrman, PhD
      Presented at: Advancing Science - A Virtual Oncology Conference
      1
      MAY 19, 2020 | 11:45 AM
      Single-nucleus and Spatial Transcriptomics of Archival Pancreatic Ductal Adenocarcinoma after Neoadjuvant Treatment
      Single-nucleus and Spatial Transcriptomics of Archival Pancreatic...
      Pancreatic ductal adenocarcinoma (PDAC) remains a treatment-refractory disease and existing molecular subtypes do not inform clinical decisions. Previously-identified bulk transcriptomic sub...
      Speaker: William L. Hwang, MD, PhD
      Presented at: Advancing Science - A Virtual Oncology Conference
      1
      MAY 19, 2020 | 10:00 AM
      Applications in Biomarker Discovery and CAR T Therapy Using High-plex RNA & Protein Spatial Profiling on FFPE Tissue
      Applications in Biomarker Discovery and CAR T Therapy Using High-plex...
      The GeoMx Digital Spatial Profiling technology enables high-plex RNA and protein profiling of any region within any tissue type. This workshop will highlight the latest developments toward e...
      Speaker: PLENARY: Carl June, MD
      Presented at: Advancing Science - A Virtual Oncology Conference
      1
      APR 29, 2020 | 8:00 AM
      Realize better NGS results through gentle cell sorting
      Realize better NGS results through gentle cell sorting
      Date: April 29, 2020 Time: 8:00AM PDT, 11:00AM EDT Single cell genomics and other next generation sequencing applications depend strongly on adequate upstream sample preparation. Results can...
      Speaker: Quy Nguyen , Felix Eppler, PhD
      Sponsored By: Miltenyi Biotec
      5 1
      APR 24, 2020 | 8:00 AM
      Isolating Ultra-high Molecular Weight (UHMW) DNA for Genome-wide Structural Variant Analysis
      Isolating Ultra-high Molecular Weight (UHMW) DNA for Genome-wide...
      DATE: April 24, 2020 TIME: 8:00am PT, 11:00am ET, 5:00pm CET...
      Speaker: Ben Clifford, PhD , Sven Bocklandt, PhD
      Sponsored By: Bionano
      11
      APR 23, 2020 | 9:00 AM
      Keynote Presentation: Individualized Health
      Keynote Presentation: Individualized Health
      Learning Objectives: 1. What is wrong with healthcare today 2. What kinds of omics and wearables data can be used to best predict disease risk and manage health...
      Speaker: Michael Snyder, PhD
      Presented at: Genetics Week Virtual Event Series 2020
      1
      APR 22, 2020 | 9:00 AM
      From Data to Biological Insight using QIAGEN OmicSoft and IPA: Single Cell Sequencing of Normal Human Liver
      From Data to Biological Insight using QIAGEN OmicSoft and IPA:...
      Single-cell RNA sequencing has emerged as an important technology that can reveal gene expression differences between different cell types. This webinar will demonstrate how bioinformatics s...
      Speaker: Jean-Noel Billaud, PhD
      Presented at: Genetics Week Virtual Event Series 2020
      Sponsored By: QIAGEN
      1
      APR 21, 2020 | 1:30 PM
      Spatially Resolved Molecular Investigation of Triple Negative Breast Cancer
      Spatially Resolved Molecular Investigation of Triple Negative...
      Triple-negative breast cancer (TNBC) is an aggressive disease that accounts for 10-20% of all breast cancer cases diagnosed annually in the U.S.1. Despite its prevalence, TNBC remains resist...
      Speaker: Dina Finan, PhD , Stephen Williams, PhD
      Presented at: Genetics Week Virtual Event Series 2020
      1
      APR 21, 2020 | 12:00 AM
      Single Cell Multi-omics: Solving the Jigsaw
      Single Cell Multi-omics: Solving the Jigsaw
      Since the introduction of single cell sequencing techniques to the genomics community, interest in its use has grown exponentially and the number of single cell publications has exploded. Th...
      Speaker: Ivan Lukić, MD, PhD
      Presented at: Genetics Week Virtual Event Series 2020
      1
      APR 21, 2020 | 12:00 AM
      Single cell gene expression: new insights through the lens of full length mRNA isoform resolution
      Single cell gene expression: new insights through the lens of...
      Single cell RNA sequencing (scRNA-seq) emerged to characterize gene expression differences between individual cells, allowing a higher resolution look at mRNA abundance than bulk RNA- seq. H...
      Speaker: Jason Underwood, PhD
      Presented at: Genetics Week Virtual Event Series 2020
      1
      APR 02, 2020 | 8:00 AM
      Bionano Genome Imaging unravels complex structural rearrangements induced by replication stress in liver cancer
      Bionano Genome Imaging unravels complex structural rearrangements...
      DATE: April 2, 2020 TIME: 8:00am PT, 11:00am ET Cyclins A2 and E1 regulate the cell cycle by promoting S phase entry and progression. We recently identified a hepatocellular carcinoma (HCC)...
      Speaker: Eric Letouzé, PhD
      Sponsored By: Bionano
      14
      MAR 25, 2020 | 6:00 AM
      Metabolomics: An Evolving Approach to Cannabis Breeding
      Metabolomics: An Evolving Approach to Cannabis Breeding
      Household produce varieties such as ‘Red Delicious,’ ‘Campari,’ and ‘Earlidew’ have been selectively bred and have been enhanced for flavor since the 1990...
      Speaker: Caleb King
      Presented at: Cannabis Sciences Virtual Event Series 2020
      2
      MAR 11, 2020 | 10:30 AM
      PANEL: The Berghia Brain Project: A Team Approach to Understanding Whole-Brain Control of State-Dependent, Motivated Behaviors
      PANEL: The Berghia Brain Project: A Team Approach to Understanding...
      The neural basis of simple rhythmic and reflexive behaviors such as swimming and gill withdrawal have been successfully studied in nudibranchs and other gastropod molluscs because the brains...
      Speaker: Paul Katz, PhD , Jeff Lichtman, MD, PhD , William Frost, PhD , Deidre Lyons, PhD , Vince Lyzinski, PhD, B.Sc, M.Sc, M.Sc.E.
      Presented at: Neuroscience Virtual Event Series 2020
      1
      NOV 06, 2019 | 7:30 AM
      Toward a universal influenza virus vaccine
      Toward a universal influenza virus vaccine
      Since the establishment of reverse genetics techniques to manipulate the influenza virus genome, it has been possible to study viral molecular signatures responsible for virulence, and the ge...
      Speaker: Adolfo Garcia-Sastre, PhD
      Presented at: Influenza Virtual Event Series 2019
      4
    SEP 08, 2020 | 10:00 AM
    Keynote Presentation: Single-cell virus sequencing of influenza infections that trigger innate immunity
    Keynote Presentation: Single-cell virus sequencing of influenza...
    Influenza infections are initiated by just a handful of virions infecting a handful of cells, so it is important to understand what happens in single infected cells. I will describe work tha...
    Speaker: Jesse D. Bloom, PhD
    Presented at: Microbiology Week Virtual Event Series 2020
    4
    SEP 02, 2020 | 7:00 AM
    Whole transcriptome in situ cell atlas reveals cellular composition and interactions in the developing human brain
    Whole transcriptome in situ cell atlas reveals cellular composition...
    DATE: September 2, 2020 TIME: 03:00pm PDT, 6:00pm EDT Spatial omics is an expanding collection of methods to examine biological molecules in their geographical context. By retaining the prec...
    Speaker: Dr. Omer Bayraktar , Pawel Zajac, Ph.D. , Dr. Rudy Van Eijsden
    Sponsored By: Illumina, NanoString Technologies
    19 3
    JUL 07, 2020 | 8:00 AM
    Development of an extraction-free, saliva-based workflow for SARS-CoV-2 detection with the Biomark™ HD platform
    Development of an extraction-free, saliva-based workflow for SARS-CoV-2...
    The need for high-throughput laboratory testing to identify SARS-CoV-2 infected individuals has reached nearly unprecedented levels. This demand has also led to supply chain issues that have...
    Speaker: David King, PhD , Richard Head, MS
    Presented at: Fluidigm Infectious Disease and Oncology Virtual Summit
    1
    JUN 17, 2020 | 1:30 PM
    Insights into the Pathogenesis of COVID-19 as Revealed by Spatial Biology
    Insights into the Pathogenesis of COVID-19 as Revealed by Spatial...
    Understanding the complex interplay between a pathogen and the host response is important to developing effective vaccines and therapeutics. The nCounter® Analysis System and GeoMx®...
    Speaker: Joseph M. Beechem, PhD , Christopher E. Mason, PhD , Robert Schwartz, PhD
    Presented at: Coronavirus Series
    Sponsored By: NanoString Technologies
    9
    JUN 03, 2020 | 12:00 PM
    Single cell multiomic analysis of T-cell exhaustion
    Single cell multiomic analysis of T-cell exhaustion
    A key step in the clinical production of CAR T cells is the expansion of engineered T cells. To generate enough cells for viable adoptive cell therapy, cells must be robustly stimulated, whi...
    Speaker: Pratip K. Chattopadhyay
    Presented at: Immuno-Oncology Virtual Event Series 2020
    Sponsored By: BD
    2
     
     
  • JUN 02, 2020 | 4:30 PM
    Plenary Address
    Plenary Address
    ...
    Speaker: Plenary Keynote: Xiaowei Zhuang, PhD
    Presented at: 2020 6th annual BRAIN Initiative Investigators Virtual Meeting
    1
    JUN 02, 2020 | 1:30 PM
    Symposium 7 - Molecular Taxonomies of Brain Cells
    Symposium 7 - Molecular Taxonomies of Brain Cells
    Recent advances in high-throughput single-cell transcriptomics and epigenomics methods allow to measure the expression of thousands of genes and identify the gene transcriptional regulation...
    Speaker: Organizer(s): Yong Yao
    Presented at: 2020 6th annual BRAIN Initiative Investigators Virtual Meeting
    1
    MAY 28, 2020 | 10:00 AM
    In situ immune profiling of heart transplant biopsies improves diagnostic accuracy and rejection risk stratification
    In situ immune profiling of heart transplant biopsies improves...
    DATE: May 28, 2020 TIME: 10:00am PT, 1:00pm ET Cardiac allograft rejection is a serious concern in transplant medicine, conferring an increased risk of acute graft failure and adverse patient...
    Speaker: Eliot Peyster, MD, MSc
    Sponsored By: Akoya Biosciences
    11
    MAY 20, 2020 | 9:00 AM
    Keynote Presentation: Quantitative biology with droplet microfluidics
    Keynote Presentation: Quantitative biology with droplet microfluidics
    Many questions at the forefront of biology depend on the interactions of millions of single cells. My lab develops technologies for studying large numbers of single cells. In this talk, I wi...
    Speaker: Adam Abate, PhD
    Presented at: Laboratory Automation & Informatics Virtual Event Series 2020
    1
    MAY 20, 2020 | 12:00 AM
    Single-cell Genomics Tools for better understanding and treatment of Human Disease
    Single-cell Genomics Tools for better understanding and treatment...
    The basic units of biological structure and function are cells, which exhibit wide variation in regard to both type and state. We assess such variation by simultaneously profiling the transc...
    Speaker: Anindita Basu, PhD
    Presented at: Laboratory Automation & Informatics Virtual Event Series 2020
    2
     
     
  • MAY 19, 2020 | 1:45 PM
    Cancer Transcriptome Atlas with NGS Readout - The essential tool for spatial genomics in oncology
    Cancer Transcriptome Atlas with NGS Readout - The essential tool...
    While many technologies focus on either exploring the spatial context of a handful of targets, or expression patterns of hundreds or thousands of targets in bulk samples or dissociated singl...
    Speaker: Kit Fuhrman, PhD
    Presented at: Advancing Science - A Virtual Oncology Conference
    1
    MAY 19, 2020 | 11:45 AM
    Single-nucleus and Spatial Transcriptomics of Archival Pancreatic Ductal Adenocarcinoma after Neoadjuvant Treatment
    Single-nucleus and Spatial Transcriptomics of Archival Pancreatic...
    Pancreatic ductal adenocarcinoma (PDAC) remains a treatment-refractory disease and existing molecular subtypes do not inform clinical decisions. Previously-identified bulk transcriptomic sub...
    Speaker: William L. Hwang, MD, PhD
    Presented at: Advancing Science - A Virtual Oncology Conference
    1
    MAY 19, 2020 | 10:00 AM
    Applications in Biomarker Discovery and CAR T Therapy Using High-plex RNA & Protein Spatial Profiling on FFPE Tissue
    Applications in Biomarker Discovery and CAR T Therapy Using High-plex...
    The GeoMx Digital Spatial Profiling technology enables high-plex RNA and protein profiling of any region within any tissue type. This workshop will highlight the latest developments toward e...
    Speaker: PLENARY: Carl June, MD
    Presented at: Advancing Science - A Virtual Oncology Conference
    1
    APR 29, 2020 | 8:00 AM
    Realize better NGS results through gentle cell sorting
    Realize better NGS results through gentle cell sorting
    Date: April 29, 2020 Time: 8:00AM PDT, 11:00AM EDT Single cell genomics and other next generation sequencing applications depend strongly on adequate upstream sample preparation. Results can...
    Speaker: Quy Nguyen , Felix Eppler, PhD
    Sponsored By: Miltenyi Biotec
    5 1
    APR 24, 2020 | 8:00 AM
    Isolating Ultra-high Molecular Weight (UHMW) DNA for Genome-wide Structural Variant Analysis
    Isolating Ultra-high Molecular Weight (UHMW) DNA for Genome-wide...
    DATE: April 24, 2020 TIME: 8:00am PT, 11:00am ET, 5:00pm CET...
    Speaker: Ben Clifford, PhD , Sven Bocklandt, PhD
    Sponsored By: Bionano
    11
     
     
  • APR 23, 2020 | 9:00 AM
    Keynote Presentation: Individualized Health
    Keynote Presentation: Individualized Health
    Learning Objectives: 1. What is wrong with healthcare today 2. What kinds of omics and wearables data can be used to best predict disease risk and manage health...
    Speaker: Michael Snyder, PhD
    Presented at: Genetics Week Virtual Event Series 2020
    1
    APR 22, 2020 | 9:00 AM
    From Data to Biological Insight using QIAGEN OmicSoft and IPA: Single Cell Sequencing of Normal Human Liver
    From Data to Biological Insight using QIAGEN OmicSoft and IPA:...
    Single-cell RNA sequencing has emerged as an important technology that can reveal gene expression differences between different cell types. This webinar will demonstrate how bioinformatics s...
    Speaker: Jean-Noel Billaud, PhD
    Presented at: Genetics Week Virtual Event Series 2020
    Sponsored By: QIAGEN
    1
    APR 21, 2020 | 1:30 PM
    Spatially Resolved Molecular Investigation of Triple Negative Breast Cancer
    Spatially Resolved Molecular Investigation of Triple Negative...
    Triple-negative breast cancer (TNBC) is an aggressive disease that accounts for 10-20% of all breast cancer cases diagnosed annually in the U.S.1. Despite its prevalence, TNBC remains resist...
    Speaker: Dina Finan, PhD , Stephen Williams, PhD
    Presented at: Genetics Week Virtual Event Series 2020
    1
    APR 21, 2020 | 12:00 AM
    Single Cell Multi-omics: Solving the Jigsaw
    Single Cell Multi-omics: Solving the Jigsaw
    Since the introduction of single cell sequencing techniques to the genomics community, interest in its use has grown exponentially and the number of single cell publications has exploded. Th...
    Speaker: Ivan Lukić, MD, PhD
    Presented at: Genetics Week Virtual Event Series 2020
    1
    APR 21, 2020 | 12:00 AM
    Single cell gene expression: new insights through the lens of full length mRNA isoform resolution
    Single cell gene expression: new insights through the lens of...
    Single cell RNA sequencing (scRNA-seq) emerged to characterize gene expression differences between individual cells, allowing a higher resolution look at mRNA abundance than bulk RNA- seq. H...
    Speaker: Jason Underwood, PhD
    Presented at: Genetics Week Virtual Event Series 2020
    1
     
     
  • APR 02, 2020 | 8:00 AM
    Bionano Genome Imaging unravels complex structural rearrangements induced by replication stress in liver cancer
    Bionano Genome Imaging unravels complex structural rearrangements...
    DATE: April 2, 2020 TIME: 8:00am PT, 11:00am ET Cyclins A2 and E1 regulate the cell cycle by promoting S phase entry and progression. We recently identified a hepatocellular carcinoma (HCC)...
    Speaker: Eric Letouzé, PhD
    Sponsored By: Bionano
    14
    MAR 25, 2020 | 6:00 AM
    Metabolomics: An Evolving Approach to Cannabis Breeding
    Metabolomics: An Evolving Approach to Cannabis Breeding
    Household produce varieties such as ‘Red Delicious,’ ‘Campari,’ and ‘Earlidew’ have been selectively bred and have been enhanced for flavor since the 1990...
    Speaker: Caleb King
    Presented at: Cannabis Sciences Virtual Event Series 2020
    2
    MAR 11, 2020 | 10:30 AM
    PANEL: The Berghia Brain Project: A Team Approach to Understanding Whole-Brain Control of State-Dependent, Motivated Behaviors
    PANEL: The Berghia Brain Project: A Team Approach to Understanding...
    The neural basis of simple rhythmic and reflexive behaviors such as swimming and gill withdrawal have been successfully studied in nudibranchs and other gastropod molluscs because the brains...
    Speaker: Paul Katz, PhD , Jeff Lichtman, MD, PhD , William Frost, PhD , Deidre Lyons, PhD , Vince Lyzinski, PhD, B.Sc, M.Sc, M.Sc.E.
    Presented at: Neuroscience Virtual Event Series 2020
    1
    NOV 06, 2019 | 7:30 AM
    Toward a universal influenza virus vaccine
    Toward a universal influenza virus vaccine
    Since the establishment of reverse genetics techniques to manipulate the influenza virus genome, it has been possible to study viral molecular signatures responsible for virulence, and the ge...
    Speaker: Adolfo Garcia-Sastre, PhD
    Presented at: Influenza Virtual Event Series 2019
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