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    Viral Genomics

    Viral genomics uses advanced analytical technologies to study the biology of disease-causing viruses at a genetic level. The aim of viral genomics is to better understand how viruses interact with their hosts and how infections spread through communities. This enables drug and vaccine development efforts as well as informing public health policies.

    Webinars

    • OCT 13, 2021 | 1:30 PM
      Panel Presentation: Advantage of Absolute Quantification of Digital PCR in Wastewater Monitoring QIAGEN's Workflow Solutions for SARS-CoV-2 Surveillance
      Panel Presentation: Advantage of Absolute Quantification of Digital...
      One significant challenge with SARS-CoV-2 wastewater monitoring is the lack of optimized and standardized sample processing steps, from sample collection to RNA detection. Viral concentratio...
      Speaker: Dominic O'Neil, MS, MBA , Colin Donohoe, PhD
      Presented at: Coronavirus Series
      Sponsored By: QIAGEN
      1
      SEP 29, 2021 | 11:59 PM
      Nanoparticle Based Delivery of Gene Editing Enzymes
      Nanoparticle Based Delivery of Gene Editing Enzymes
      Cas9 based therapeutics have the potential to revolutionize the treatment of genetic diseases. However, safe and effective methods for delivering Cas9 protein, gRNA and donor DNA need to be...
      Speaker: Niren Murthy, PhD
      Presented at: CRISPR Virtual Event Series 2021
      1 2
      SEP 22, 2021 | 9:00 AM
      Keynote Presentation: Membrane-Cytoskeletal Dynamics in Disease
      Keynote Presentation: Membrane-Cytoskeletal Dynamics in Disease
      Cells of the liver and pancreas are highly polarized and well differentiated, contributing to food digestion through the secretion of lipid emulsifying bile, and proteolytic juice into the g...
      Speaker: Mark McNiven, PhD
      Presented at: Cell Biology Virtual Event Series 2021
      1
      SEP 09, 2021 | 10:30 AM
      Approaches to SARS-CoV-2 Sample Processing for RNA Detection
      Approaches to SARS-CoV-2 Sample Processing for RNA Detection
      The ongoing COVID-19 pandemic has elevated the need for reliable, cost-effective means for widespread virus detection. This webinar will explore two distinct approaches for isolating viral R...
      Speaker: Nicolas Caffarelli , Kan Saito, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      Sponsored By: MilliporeSigma
      5
      SEP 09, 2021 | 12:00 AM
      Tracking of Novel SARS-CoV-2 Lineages Through Wastewater Surveillance
      Tracking of Novel SARS-CoV-2 Lineages Through Wastewater Surveillance
      Analysis of community wastewater has been shown to be an effective method for tracking the prevalence of SARS-COV-2. Our group has developed techniques for sequencing a portion of the SARS-C...
      Speaker: Marc Johnson, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      0
      SEP 09, 2021 | 12:00 AM
      Development of Capture Sequencing Assays for Enhanced Detection and Genotyping of Tick-borne Pathogens and Infectious Vertebrate Viruses
      Development of Capture Sequencing Assays for Enhanced Detection...
      Early detection is critical for prompt and effective treatment of acute infectious diseases. For tick-borne diseases (TBD), the lack of accurate early diagnosis can result in delayed treatme...
      Speaker: Komal Jain, M.Sc., MS
      Presented at: Microbiology Week Virtual Event Series 2021
      1
      SEP 09, 2021 | 12:00 AM
      Targeted Protein Degradation as an Antiviral Strategy
      Targeted Protein Degradation as an Antiviral Strategy
      We currently do not have effective vaccines or antiviral drugs for most of the viral diseases that afflict humans. Antiviral therapies that enable long-term control over human immunodeficien...
      Speaker: Priscilla Li-ning Yang, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      1
      SEP 09, 2021 | 12:00 AM
      RNA Viruses Reshape the RNA Modification Landscape in the Cell
      RNA Viruses Reshape the RNA Modification Landscape in the Cell
      Ribonucleic acid (RNA) has a breathtaking variety of biological functions, which far exceeds its classical role as a carrier of genetic information. The repertoire of this versatile molecule...
      Speaker: Cara T. Pager, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      1
      SEP 08, 2021 | 10:30 AM
      A CRISPR-Powered Universal Infectious Disease Assay
      A CRISPR-Powered Universal Infectious Disease Assay
      Varicella zoster virus (VZV) causes two clinically distinct forms of disease, varicella and herpes zoster. These forms can each present with multiple manifestations ranging from lesions incl...
      Speaker: Jon Armstrong, MSc
      Presented at: Microbiology Week Virtual Event Series 2021
      Sponsored By: Jumpcode Genomics
      0
      SEP 08, 2021 | 7:30 AM
      Keynote Presentation: Viromics: Lessons from the Oceans, Soils, and Humans
      Keynote Presentation: Viromics: Lessons from the Oceans, Soils,...
      Microbes are recently recognized as driving the energy and nutrient transformations that fuel Earth’s ecosystems in soils, oceans and humans. Where studied, viruses appear to modulate...
      Speaker: Matthew Sullivan, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      1
      SEP 08, 2021 | 12:00 AM
      Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty to Pharmaceutical and Clinical Application(s)
      Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty...
      The Human Microbiome Project was conceived almost 15 years ago, as an extension of the Human Genome Project, to explore the diversity of human-associated microorganisms at multiple body site...
      Speaker: Ramy K. Aziz, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      1
      SEP 07, 2021 | 9:00 AM
      Keynote Presentation: Mammalian RNAi Response to Virus Infection
      Keynote Presentation: Mammalian RNAi Response to Virus Infection
      Innate and adaptive immunity mechanisms provide antiviral protection in mammals. In this talk, I shall present recent findings from my lab and collaborators revealing a distinct form of mamm...
      Speaker: Shou-Wei Ding, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      1
      SEP 07, 2021 | 12:00 AM
      Virus Replication:  The Role of the Unique Pathogenic Organelle
      Virus Replication: The Role of the Unique Pathogenic Organelle
      Nagy is a Professor in the Department of Plant Pathology, University of Kentucky. Dr. Nagy studies the functions of host proteins and lipids in viral RNA replication. The Nagy lab is using a...
      Speaker: Peter L. Nagy, MD., PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      0
      SEP 07, 2021 | 12:00 AM
      Understand the Emerging RNA Viruses
      Understand the Emerging RNA Viruses
      The Coronavirus disease 2019 (COVID-19) pandemic poses an unprecedented challenge for public health, which is caused by infection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV...
      Speaker: Rong Hai, PhD
      Presented at: Microbiology Week Virtual Event Series 2021
      0
      AUG 31, 2021 | 9:00 AM
      The Regulation of ALC1 by TRIM33 during the DNA Damage Response
      The Regulation of ALC1 by TRIM33 during the DNA Damage Response
      Date: July 07, 2021 Time: 8:00am (PDT), 11:00am (EDT) The DNA damage response is extremely crucial in maintaining genomic integrity. Failure to repair damaged DNA can result in the propagati...
      Speaker: Rukia Henry
      Sponsored By: Thermo Fisher Scientific/Gibco
      4
      AUG 25, 2021 | 12:00 AM
      Mechanistic Insight into Tandem Repeat Expansions in Amyotrophic Lateral Sclerosis
      Mechanistic Insight into Tandem Repeat Expansions in Amyotrophic...
      Over 40 tandem repeats undergo expansion events that lead to neurological disease. This number is likely an underestimate as many repeats are difficult to amplify using existing short read s...
      Speaker: Paul Valdmanis, PhD
      Presented at: Neuroscience Virtual Event Series 2021
      Sponsored By: PacBio
      1
      JUL 22, 2021 | 4:15 PM
      Clinical Scale Gene Editing for Cell and Gene Therapy Applications
      Clinical Scale Gene Editing for Cell and Gene Therapy Applications
      Genome editing technologies have enabled the precise manipulation of DNA sequences at targeted sites to achieve therapeutic effects. Engineered endonucleases like CRISPR-Cas9 institute site-...
      Speaker: Rama Shivakumar
      Presented at: GenScript Gene & Cell Engineering Virtual Summit
      4
      JUL 22, 2021 | 3:30 PM
      "New delivery vehicles for gene editing enzymes"
      "New delivery vehicles for gene editing enzymes"
      Learning Objectives: 1. Delivery vehicles for the Cas9 RNP 2. Gene editing after a direct tissue injection 3. New linkers for conjugating proteins to polymers...
      Speaker: Niren Murthy, PhD
      Presented at: GenScript Gene & Cell Engineering Virtual Summit
      2
      JUL 22, 2021 | 12:45 PM
      CRISPR/Cas9-based genome editing for autologous CAR-T cell production
      CRISPR/Cas9-based genome editing for autologous CAR-T cell production
      Gene editing technologies such as CRISPR/Cas9 have greater flexibility and high efficiency. CRISPR technology enables targeted insertion of transgenes at the desired locus and has the abilit...
      Speaker: Ramarao Vepachedu, PhD
      Presented at: GenScript Gene & Cell Engineering Virtual Summit
      3
      JUL 22, 2021 | 11:00 AM
      Keynote Presentation  Reprogramming Human T Cells with CRISPR
      Keynote Presentation Reprogramming Human T Cells with CRISPR
      Human T cells are critical effectors of immune protection from infections, autoimmune pathology, and cancer immunotherapy. We use CRISPR-mediated gene editing in primary human T cells to sys...
      Speaker: Alexander Marson, MD, PhD
      Presented at: GenScript Gene & Cell Engineering Virtual Summit
      2
      JUN 29, 2021 | 8:00 AM
      Leveraging acoustic and tip-based liquid handling to increase SARS-CoV-2 sequencing throughput
      Leveraging acoustic and tip-based liquid handling to increase...
      Date: June 29, 2021 Time: 08:00am PDT As the SARS-CoV-2 virus that causes COVID-19 keeps mutating, there is a growing need to sequence the viral genome from many COVID-19-positive samples to...
      Speaker: Dr. Eric Chow
      Sponsored By: Beckman Coulter Life Sciences
      13 1
      JUN 16, 2021 | 11:00 AM
      Implementation of a High-Throughput Wastewater SARS-CoV-2 Detection Method: Providing Actionable Data to your County or Campus
      Implementation of a High-Throughput Wastewater SARS-CoV-2 Detection...
      Date: June 16, 2021 Time: 11:00am (PDT), 2:00pm (EDT) Large-scale wastewater surveillance can be used to help communities monitor infection dynamics for SARS-CoV-2. Wide-spread implementatio...
      Speaker: Smruthi Karthikeyan, PhD
      Sponsored By: Ceres Nanosciences
      10
      JUN 09, 2021 | 7:00 AM
      Preventing cell misidentification in your daily lab routine
      Preventing cell misidentification in your daily lab routine
      Date: June 9, 2021 Time: 09 June 2021, 7am PDT, 10am EDT, 4pm CEST cells with dramatic implications on the validity of past cell culture related research. The fact that at least 509 cell lin...
      Speaker: Gabriela Saldanha , Jessica Wagener, PhD
      Sponsored By: Eppendorf
      40 3
      JUN 02, 2021 | 8:00 AM
      Exploiting digital histology approaches to probe the pathophysiology of SARS-CoV-2 infection
      Exploiting digital histology approaches to probe the pathophysiology...
      Date: June 2, 2021 Time: 8:00am (PDT), 11:00am (EDT) In this introduction Kelly Hunter will address the first Learning Objective. He will cover i) a range of digital pathology and tissue mul...
      Speaker: Kelly Hunter, BSc Biochemistry, MSc Genomics Medicine , Dr. Graham Taylor, BSc, Ph.D
      Sponsored By: Leica Biosystems
      11 1
    OCT 13, 2021 | 1:30 PM
    Panel Presentation: Advantage of Absolute Quantification of Digital PCR in Wastewater Monitoring QIAGEN's Workflow Solutions for SARS-CoV-2 Surveillance
    Panel Presentation: Advantage of Absolute Quantification of Digital...
    One significant challenge with SARS-CoV-2 wastewater monitoring is the lack of optimized and standardized sample processing steps, from sample collection to RNA detection. Viral concentratio...
    Speaker: Dominic O'Neil, MS, MBA , Colin Donohoe, PhD
    Presented at: Coronavirus Series
    Sponsored By: QIAGEN
    1
    SEP 29, 2021 | 11:59 PM
    Nanoparticle Based Delivery of Gene Editing Enzymes
    Nanoparticle Based Delivery of Gene Editing Enzymes
    Cas9 based therapeutics have the potential to revolutionize the treatment of genetic diseases. However, safe and effective methods for delivering Cas9 protein, gRNA and donor DNA need to be...
    Speaker: Niren Murthy, PhD
    Presented at: CRISPR Virtual Event Series 2021
    1 2
    SEP 22, 2021 | 9:00 AM
    Keynote Presentation: Membrane-Cytoskeletal Dynamics in Disease
    Keynote Presentation: Membrane-Cytoskeletal Dynamics in Disease
    Cells of the liver and pancreas are highly polarized and well differentiated, contributing to food digestion through the secretion of lipid emulsifying bile, and proteolytic juice into the g...
    Speaker: Mark McNiven, PhD
    Presented at: Cell Biology Virtual Event Series 2021
    1
    SEP 09, 2021 | 10:30 AM
    Approaches to SARS-CoV-2 Sample Processing for RNA Detection
    Approaches to SARS-CoV-2 Sample Processing for RNA Detection
    The ongoing COVID-19 pandemic has elevated the need for reliable, cost-effective means for widespread virus detection. This webinar will explore two distinct approaches for isolating viral R...
    Speaker: Nicolas Caffarelli , Kan Saito, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    Sponsored By: MilliporeSigma
    5
    SEP 09, 2021 | 12:00 AM
    Tracking of Novel SARS-CoV-2 Lineages Through Wastewater Surveillance
    Tracking of Novel SARS-CoV-2 Lineages Through Wastewater Surveillance
    Analysis of community wastewater has been shown to be an effective method for tracking the prevalence of SARS-COV-2. Our group has developed techniques for sequencing a portion of the SARS-C...
    Speaker: Marc Johnson, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    0
     
     
  • SEP 09, 2021 | 12:00 AM
    Development of Capture Sequencing Assays for Enhanced Detection and Genotyping of Tick-borne Pathogens and Infectious Vertebrate Viruses
    Development of Capture Sequencing Assays for Enhanced Detection...
    Early detection is critical for prompt and effective treatment of acute infectious diseases. For tick-borne diseases (TBD), the lack of accurate early diagnosis can result in delayed treatme...
    Speaker: Komal Jain, M.Sc., MS
    Presented at: Microbiology Week Virtual Event Series 2021
    1
    SEP 09, 2021 | 12:00 AM
    Targeted Protein Degradation as an Antiviral Strategy
    Targeted Protein Degradation as an Antiviral Strategy
    We currently do not have effective vaccines or antiviral drugs for most of the viral diseases that afflict humans. Antiviral therapies that enable long-term control over human immunodeficien...
    Speaker: Priscilla Li-ning Yang, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    1
    SEP 09, 2021 | 12:00 AM
    RNA Viruses Reshape the RNA Modification Landscape in the Cell
    RNA Viruses Reshape the RNA Modification Landscape in the Cell
    Ribonucleic acid (RNA) has a breathtaking variety of biological functions, which far exceeds its classical role as a carrier of genetic information. The repertoire of this versatile molecule...
    Speaker: Cara T. Pager, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    1
    SEP 08, 2021 | 10:30 AM
    A CRISPR-Powered Universal Infectious Disease Assay
    A CRISPR-Powered Universal Infectious Disease Assay
    Varicella zoster virus (VZV) causes two clinically distinct forms of disease, varicella and herpes zoster. These forms can each present with multiple manifestations ranging from lesions incl...
    Speaker: Jon Armstrong, MSc
    Presented at: Microbiology Week Virtual Event Series 2021
    Sponsored By: Jumpcode Genomics
    0
    SEP 08, 2021 | 7:30 AM
    Keynote Presentation: Viromics: Lessons from the Oceans, Soils, and Humans
    Keynote Presentation: Viromics: Lessons from the Oceans, Soils,...
    Microbes are recently recognized as driving the energy and nutrient transformations that fuel Earth’s ecosystems in soils, oceans and humans. Where studied, viruses appear to modulate...
    Speaker: Matthew Sullivan, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    1
     
     
  • SEP 08, 2021 | 12:00 AM
    Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty to Pharmaceutical and Clinical Application(s)
    Translating Pharmacomicrobiomics: From Microbiome Cloud Uncertainty...
    The Human Microbiome Project was conceived almost 15 years ago, as an extension of the Human Genome Project, to explore the diversity of human-associated microorganisms at multiple body site...
    Speaker: Ramy K. Aziz, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    1
    SEP 07, 2021 | 9:00 AM
    Keynote Presentation: Mammalian RNAi Response to Virus Infection
    Keynote Presentation: Mammalian RNAi Response to Virus Infection
    Innate and adaptive immunity mechanisms provide antiviral protection in mammals. In this talk, I shall present recent findings from my lab and collaborators revealing a distinct form of mamm...
    Speaker: Shou-Wei Ding, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    1
    SEP 07, 2021 | 12:00 AM
    Virus Replication:  The Role of the Unique Pathogenic Organelle
    Virus Replication: The Role of the Unique Pathogenic Organelle
    Nagy is a Professor in the Department of Plant Pathology, University of Kentucky. Dr. Nagy studies the functions of host proteins and lipids in viral RNA replication. The Nagy lab is using a...
    Speaker: Peter L. Nagy, MD., PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    0
    SEP 07, 2021 | 12:00 AM
    Understand the Emerging RNA Viruses
    Understand the Emerging RNA Viruses
    The Coronavirus disease 2019 (COVID-19) pandemic poses an unprecedented challenge for public health, which is caused by infection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV...
    Speaker: Rong Hai, PhD
    Presented at: Microbiology Week Virtual Event Series 2021
    0
    AUG 31, 2021 | 9:00 AM
    The Regulation of ALC1 by TRIM33 during the DNA Damage Response
    The Regulation of ALC1 by TRIM33 during the DNA Damage Response
    Date: July 07, 2021 Time: 8:00am (PDT), 11:00am (EDT) The DNA damage response is extremely crucial in maintaining genomic integrity. Failure to repair damaged DNA can result in the propagati...
    Speaker: Rukia Henry
    Sponsored By: Thermo Fisher Scientific/Gibco
    4
     
     
  • AUG 25, 2021 | 12:00 AM
    Mechanistic Insight into Tandem Repeat Expansions in Amyotrophic Lateral Sclerosis
    Mechanistic Insight into Tandem Repeat Expansions in Amyotrophic...
    Over 40 tandem repeats undergo expansion events that lead to neurological disease. This number is likely an underestimate as many repeats are difficult to amplify using existing short read s...
    Speaker: Paul Valdmanis, PhD
    Presented at: Neuroscience Virtual Event Series 2021
    Sponsored By: PacBio
    1
    JUL 22, 2021 | 4:15 PM
    Clinical Scale Gene Editing for Cell and Gene Therapy Applications
    Clinical Scale Gene Editing for Cell and Gene Therapy Applications
    Genome editing technologies have enabled the precise manipulation of DNA sequences at targeted sites to achieve therapeutic effects. Engineered endonucleases like CRISPR-Cas9 institute site-...
    Speaker: Rama Shivakumar
    Presented at: GenScript Gene & Cell Engineering Virtual Summit
    4
    JUL 22, 2021 | 3:30 PM
    "New delivery vehicles for gene editing enzymes"
    "New delivery vehicles for gene editing enzymes"
    Learning Objectives: 1. Delivery vehicles for the Cas9 RNP 2. Gene editing after a direct tissue injection 3. New linkers for conjugating proteins to polymers...
    Speaker: Niren Murthy, PhD
    Presented at: GenScript Gene & Cell Engineering Virtual Summit
    2
    JUL 22, 2021 | 12:45 PM
    CRISPR/Cas9-based genome editing for autologous CAR-T cell production
    CRISPR/Cas9-based genome editing for autologous CAR-T cell production
    Gene editing technologies such as CRISPR/Cas9 have greater flexibility and high efficiency. CRISPR technology enables targeted insertion of transgenes at the desired locus and has the abilit...
    Speaker: Ramarao Vepachedu, PhD
    Presented at: GenScript Gene & Cell Engineering Virtual Summit
    3
    JUL 22, 2021 | 11:00 AM
    Keynote Presentation  Reprogramming Human T Cells with CRISPR
    Keynote Presentation Reprogramming Human T Cells with CRISPR
    Human T cells are critical effectors of immune protection from infections, autoimmune pathology, and cancer immunotherapy. We use CRISPR-mediated gene editing in primary human T cells to sys...
    Speaker: Alexander Marson, MD, PhD
    Presented at: GenScript Gene & Cell Engineering Virtual Summit
    2
     
     
  • JUN 29, 2021 | 8:00 AM
    Leveraging acoustic and tip-based liquid handling to increase SARS-CoV-2 sequencing throughput
    Leveraging acoustic and tip-based liquid handling to increase...
    Date: June 29, 2021 Time: 08:00am PDT As the SARS-CoV-2 virus that causes COVID-19 keeps mutating, there is a growing need to sequence the viral genome from many COVID-19-positive samples to...
    Speaker: Dr. Eric Chow
    Sponsored By: Beckman Coulter Life Sciences
    13 1
    JUN 16, 2021 | 11:00 AM
    Implementation of a High-Throughput Wastewater SARS-CoV-2 Detection Method: Providing Actionable Data to your County or Campus
    Implementation of a High-Throughput Wastewater SARS-CoV-2 Detection...
    Date: June 16, 2021 Time: 11:00am (PDT), 2:00pm (EDT) Large-scale wastewater surveillance can be used to help communities monitor infection dynamics for SARS-CoV-2. Wide-spread implementatio...
    Speaker: Smruthi Karthikeyan, PhD
    Sponsored By: Ceres Nanosciences
    10
    JUN 09, 2021 | 7:00 AM
    Preventing cell misidentification in your daily lab routine
    Preventing cell misidentification in your daily lab routine
    Date: June 9, 2021 Time: 09 June 2021, 7am PDT, 10am EDT, 4pm CEST cells with dramatic implications on the validity of past cell culture related research. The fact that at least 509 cell lin...
    Speaker: Gabriela Saldanha , Jessica Wagener, PhD
    Sponsored By: Eppendorf
    40 3
    JUN 02, 2021 | 8:00 AM
    Exploiting digital histology approaches to probe the pathophysiology of SARS-CoV-2 infection
    Exploiting digital histology approaches to probe the pathophysiology...
    Date: June 2, 2021 Time: 8:00am (PDT), 11:00am (EDT) In this introduction Kelly Hunter will address the first Learning Objective. He will cover i) a range of digital pathology and tissue mul...
    Speaker: Kelly Hunter, BSc Biochemistry, MSc Genomics Medicine , Dr. Graham Taylor, BSc, Ph.D
    Sponsored By: Leica Biosystems
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